| Software | Description | Link |
|---|---|---|
| dRep | dRep is a python program for rapidly comparing large numbers of genomes. | https://github.com/MrOlm/drep |
| microbiome R package | - | https://github.com/microbiome/microbiome |
| PPanGGOLiN | Depicting microbial species diversity via a Partitioned PanGenome Graph Of Linked Neighbors | https://github.com/labgem/PPanGGOLiN |